The development and Comparison of Quantitative PCR Assays and Enzyme-linked Immunosorbent Assays as Rapid Detection Methods for Specific Foliar Endophytes
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Certain species of foliar fungal endophytes found in conifer trees produce anti-insect compounds. Seedlings inoculated with these toxigenic endophytes have increased tolerance to the spruce budworm, Choristoneura fumiferana. To facilitate the detection of the fungi in tree samples, polyclonal assays were developed for the pyrenophorol-producing endophytes Lophodermium nitens CBS127939, Lophodermium nitens CBS127941 and Lophodermium cf. piceae CBS127942. LOQs were found to be 50 ng of mycelium for each assay. qPCR assays were developed for the rugulosin-producing endophyte Phialocephala scopiformis DAOM229536 and pyrenophorol-producing endophytes Lophodermium nitens CBS127939 and Lophodermium nitens CBS127941 based on the ITS region of fungal ribosomal DNA targeting genetic polymorphisms unique to those strains. LOQs were found to be 100 ng, 10 ng and 10 ng of mycelium/gram of needle, respectively. The qPCR method was found to be more sensitive, detecting the endophytes in 48% of tree samples. The polyclonal assay detected endophytes in 7% of samples.
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Copyright © 2014 the author(s). Theses may be used for non-commercial research, educational, or related academic purposes only. Such uses include personal study, research, scholarship, and teaching. Theses may only be shared by linking to Carleton University Institutional Repository and no part may be used without proper attribution to the author. No part may be used for commercial purposes directly or indirectly via a for-profit platform; no adaptation or derivative works are permitted without consent from the copyright owner.
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